{"id":93,"date":"2022-06-20T16:15:54","date_gmt":"2022-06-20T15:15:54","guid":{"rendered":"https:\/\/insdc.org\/?page_id=93"},"modified":"2022-07-21T14:53:52","modified_gmt":"2022-07-21T13:53:52","slug":"controlled-vocabulary-specimenvoucher-qualifier","status":"publish","type":"page","link":"https:\/\/www.insdc.org\/submitting-standards\/controlled-vocabulary-specimenvoucher-qualifier\/","title":{"rendered":"Controlled vocabulary for \/specimen_voucher qualifier"},"content":{"rendered":"<p>This page contains the current definition, format and controlled vocabularly for specimen voucher qualifier.<\/p>\n<p>The page has been created on Ocober 9, 2013.<\/p>\n<p> <\/p>\n<p><strong>Qualifier<\/strong>: \/specimen_voucher=<\/p>\n<p><strong>Definition<\/strong>: identifier for the specimen from which the nucleic acid sequenced was obtained<\/p>\n<p><strong>Value format<\/strong>: \/specimen_voucher=”[<institution-code>:[<collection-code>:]]<specimen_id>”<\/p>\n<p>Please note structured vouchers include institution-codes (and optional collection-codes) are taken from a<\/p>\n<p>controlled vocabulary maintained by the INSDC that denotes the museum or herbarium collection where<\/p>\n<p>the specimen resides: ftp:\/\/ftp.ncbi.nlm.nih.gov\/pub\/taxonomy\/coll_dump.txt<\/p>\n<p><strong>Example<\/strong>:<\/p>\n<p>\/specimen_voucher=”UAM:Mamm:52179″<\/p>\n<p>\/specimen_voucher=”AMCC:101706″<\/p>\n<p>\/specimen_voucher=”USNM:field series 8798″<\/p>\n<p>\/specimen_voucher=”personal:Dan Janzen:99-SRNP-2003″<\/p>\n<p>\/specimen_voucher=”99-SRNP-2003″ <\/p>\n<p><strong>Comment<\/strong>: the \/specimen_voucher qualifier is intended to annotate a reference to the physical specimen<\/p>\n<p>that remains after the sequence has been obtained; if the specimen was destroyed in the process of sequencing,<\/p>\n<p>electronic images (e-vouchers) are an adequate substitute for a physical voucher specimen; ideally the specimens<\/p>\n<p>will be deposited in a curated museum, herbarium, or frozen tissue collection, but often they will remain in a<\/p>\n<p>personal or laboratory collection for some time before they are deposited in a curated collection; there are three<\/p>\n<p>forms of specimen_voucher qualifiers; if the text of the qualifier includes one or more colons it is a ‘structured<\/p>\n<p>voucher’; <\/p>\n","protected":false},"excerpt":{"rendered":"<p>This page contains the current definition, format and controlled vocabularly for specimen voucher qualifier. The page has been created on Ocober 9, 2013. Qualifier: \/specimen_voucher= Definition: identifier for the specimen from which the nucleic acid sequenced was obtained Value…<\/p>\n","protected":false},"author":2,"featured_media":0,"parent":233,"menu_order":0,"comment_status":"closed","ping_status":"closed","template":"","meta":{"_acf_changed":false,"footnotes":""},"acf":[],"_links":{"self":[{"href":"https:\/\/www.insdc.org\/wp-json\/wp\/v2\/pages\/93"}],"collection":[{"href":"https:\/\/www.insdc.org\/wp-json\/wp\/v2\/pages"}],"about":[{"href":"https:\/\/www.insdc.org\/wp-json\/wp\/v2\/types\/page"}],"author":[{"embeddable":true,"href":"https:\/\/www.insdc.org\/wp-json\/wp\/v2\/users\/2"}],"replies":[{"embeddable":true,"href":"https:\/\/www.insdc.org\/wp-json\/wp\/v2\/comments?post=93"}],"version-history":[{"count":1,"href":"https:\/\/www.insdc.org\/wp-json\/wp\/v2\/pages\/93\/revisions"}],"predecessor-version":[{"id":95,"href":"https:\/\/www.insdc.org\/wp-json\/wp\/v2\/pages\/93\/revisions\/95"}],"up":[{"embeddable":true,"href":"https:\/\/www.insdc.org\/wp-json\/wp\/v2\/pages\/233"}],"wp:attachment":[{"href":"https:\/\/www.insdc.org\/wp-json\/wp\/v2\/media?parent=93"}],"curies":[{"name":"wp","href":"https:\/\/api.w.org\/{rel}","templated":true}]}}