{"id":81,"date":"2022-06-20T15:41:23","date_gmt":"2022-06-20T14:41:23","guid":{"rendered":"https:\/\/insdc.org\/?page_id=81"},"modified":"2022-07-21T14:52:39","modified_gmt":"2022-07-21T13:52:39","slug":"controlled-vocabulary-recombination-class","status":"publish","type":"page","link":"https:\/\/www.insdc.org\/submitting-standards\/controlled-vocabulary-recombination-class\/","title":{"rendered":"Controlled vocabulary for \/recombination_class"},"content":{"rendered":"<p>A new qualifier was introduced in version 10.6 (October 2016) of the Feature table definitions to be supported from 15-OCT-2016: \/recombination_class<\/p>\n<p>The text below outlines the format and the present list of allowed controlled vocabulary. Please note that mappings to <a href=\"http:\/\/www.sequenceontology.org\/miso\">Sequence Ontology (SO)<\/a> are given in brackets () but should not be used as part of the value format. Please see below for examples.<\/p>\n<p><strong>Qualifier:<\/strong> \/recombination_class<\/p>\n<p><strong>Definition:<\/strong> a structured description of the classification of recombination hotspot region within a sequence<\/p>\n<p><strong>Value format:<\/strong> “TYPE”<\/p>\n<p><strong>Examples:<\/strong><\/p>\n<p>\/recombination_class=”meiotic”<\/p>\n<p>\/recombination_class=”chromosome_breakpoint”<\/p>\n<p><strong>Comment:<\/strong> TYPE is a term taken from the INSDC controlled vocabulary for recombination classes:<\/p>\n<p><strong>meiotic <\/strong>(SO:0002155)<strong>:<\/strong> A genomic region in which there is an exchange of genetic material as a result of the repair of meiosis-specific double strand breaks that occur during meiotic prophase<\/p>\n<p><strong>mitotic <\/strong>(SO:0002154)<strong>: <\/strong>A genomic region where there is an exchange of genetic material with another genomic region, occurring in somatic cells.<\/p>\n<p><strong>non_allelic_homologous <\/strong>(SO:0002094)<strong>:<\/strong> A genomic region at a non-allelic position where exchange of genetic material happens as a result of homologous recombination.<\/p>\n<p><strong>chromosome_breakpoint <\/strong>(SO:0001021)<strong>:<\/strong> A chromosomal region that may sustain a double-strand break, resulting in a recombination event.<strong><br \/>\n<\/strong><\/p>\n<p><strong>other:<\/strong> \/recombination_class not included in any other term.<\/p>\n<p>\/recombination classes not yet in the INSDC \/recombination_class controlled vocabulary can be annotated by entering \/recombination_class=”other” with \/note=”[brief explanation of novel \/recombination_class]”;<\/p>\n","protected":false},"excerpt":{"rendered":"<p>A new qualifier was introduced in version 10.6 (October 2016) of the Feature table definitions to be supported from 15-OCT-2016: \/recombination_class The text below outlines the format and the present list of allowed controlled vocabulary. Please note that mappings to Sequence Ontology (SO) are…<\/p>\n","protected":false},"author":2,"featured_media":0,"parent":233,"menu_order":0,"comment_status":"closed","ping_status":"closed","template":"","meta":{"_acf_changed":false,"footnotes":""},"acf":[],"_links":{"self":[{"href":"https:\/\/www.insdc.org\/wp-json\/wp\/v2\/pages\/81"}],"collection":[{"href":"https:\/\/www.insdc.org\/wp-json\/wp\/v2\/pages"}],"about":[{"href":"https:\/\/www.insdc.org\/wp-json\/wp\/v2\/types\/page"}],"author":[{"embeddable":true,"href":"https:\/\/www.insdc.org\/wp-json\/wp\/v2\/users\/2"}],"replies":[{"embeddable":true,"href":"https:\/\/www.insdc.org\/wp-json\/wp\/v2\/comments?post=81"}],"version-history":[{"count":1,"href":"https:\/\/www.insdc.org\/wp-json\/wp\/v2\/pages\/81\/revisions"}],"predecessor-version":[{"id":82,"href":"https:\/\/www.insdc.org\/wp-json\/wp\/v2\/pages\/81\/revisions\/82"}],"up":[{"embeddable":true,"href":"https:\/\/www.insdc.org\/wp-json\/wp\/v2\/pages\/233"}],"wp:attachment":[{"href":"https:\/\/www.insdc.org\/wp-json\/wp\/v2\/media?parent=81"}],"curies":[{"name":"wp","href":"https:\/\/api.w.org\/{rel}","templated":true}]}}