{"id":40,"date":"2022-06-20T14:10:15","date_gmt":"2022-06-20T13:10:15","guid":{"rendered":"https:\/\/insdc.org\/?page_id=40"},"modified":"2022-07-21T14:52:18","modified_gmt":"2022-07-21T13:52:18","slug":"controlled-vocabulary-linkageevidence-qualifier","status":"publish","type":"page","link":"https:\/\/www.insdc.org\/submitting-standards\/controlled-vocabulary-linkageevidence-qualifier\/","title":{"rendered":"Controlled vocabulary for \/linkage_evidence qualifier"},"content":{"rendered":"<p>This page contains the current definition, format and controlled vocabularly for linkage_evidence qualifier.<\/p>\n<p>The page has been created on Ocober 9, 2013.<\/p>\n<p> <\/p>\n<p><strong>Qualifier<\/strong>: \/linkage_evidence=<\/p>\n<p><strong>Definition<\/strong>: type of evidence establishing linkage across an assembly_gap.<\/p>\n<p>Only allowed to be used with assembly_gap features that have a \/gap_type <\/p>\n<p>value of “within scaffold”, “repeat within scaffold” or “contamination”;<\/p>\n<p>Please note if \/gap-type=”contamination”, \/linkage_evidence must be used and the value of \/linkage_evidence must be<\/p>\n<p>“unspecified”.<\/p>\n<p> <\/p>\n<p><strong>Value format<\/strong>: “pcr”, “paired-ends”, “align genus”, “align xgenus”, “align trnscpt”, “within clone”, “clone contig”, “map”, “strobe”,<\/p>\n<p>“proximity ligation”, “unspecified” <\/p>\n<p><strong>Examples<\/strong>:<\/p>\n<p>\/linkage_evidence=”paired-ends”<\/p>\n<p>\/linkage_evidence=”within clone” <\/p>\n<p><strong>Comment<\/strong>: This qualifier is used only for assembly_gap features and its values are<\/p>\n<p>controlled by the AGP Specification version 2.0:<\/p>\n<p>http:\/\/www.ncbi.nlm.nih.gov\/projects\/genome\/assembly\/agp\/AGP_Specification.shtml<\/p>\n","protected":false},"excerpt":{"rendered":"<p>This page contains the current definition, format and controlled vocabularly for linkage_evidence qualifier. The page has been created on Ocober 9, 2013. Qualifier: \/linkage_evidence= Definition: type of evidence establishing linkage across an assembly_gap. Only allowed to be used with…<\/p>\n","protected":false},"author":1,"featured_media":0,"parent":233,"menu_order":0,"comment_status":"closed","ping_status":"closed","template":"","meta":{"_acf_changed":false,"footnotes":""},"acf":[],"_links":{"self":[{"href":"https:\/\/www.insdc.org\/wp-json\/wp\/v2\/pages\/40"}],"collection":[{"href":"https:\/\/www.insdc.org\/wp-json\/wp\/v2\/pages"}],"about":[{"href":"https:\/\/www.insdc.org\/wp-json\/wp\/v2\/types\/page"}],"author":[{"embeddable":true,"href":"https:\/\/www.insdc.org\/wp-json\/wp\/v2\/users\/1"}],"replies":[{"embeddable":true,"href":"https:\/\/www.insdc.org\/wp-json\/wp\/v2\/comments?post=40"}],"version-history":[{"count":1,"href":"https:\/\/www.insdc.org\/wp-json\/wp\/v2\/pages\/40\/revisions"}],"predecessor-version":[{"id":42,"href":"https:\/\/www.insdc.org\/wp-json\/wp\/v2\/pages\/40\/revisions\/42"}],"up":[{"embeddable":true,"href":"https:\/\/www.insdc.org\/wp-json\/wp\/v2\/pages\/233"}],"wp:attachment":[{"href":"https:\/\/www.insdc.org\/wp-json\/wp\/v2\/media?parent=40"}],"curies":[{"name":"wp","href":"https:\/\/api.w.org\/{rel}","templated":true}]}}