{"id":38,"date":"2022-06-20T14:08:31","date_gmt":"2022-06-20T13:08:31","guid":{"rendered":"https:\/\/insdc.org\/?page_id=38"},"modified":"2022-07-21T14:52:12","modified_gmt":"2022-07-21T13:52:12","slug":"controlled-vocabulary-gaptype-qualifier","status":"publish","type":"page","link":"https:\/\/www.insdc.org\/submitting-standards\/controlled-vocabulary-gaptype-qualifier\/","title":{"rendered":"Controlled vocabulary for \/gap_type qualifier"},"content":{"rendered":"<p>This page contains the current definition, format and controlled vocabularly for gap_type qualifier.<\/p>\n<p>The page has been created on Ocober 9, 2013. Last updated on December 6, 2017.<\/p>\n<p> <\/p>\n<p><strong>Qualifier<\/strong>: \/gap_type=<\/p>\n<p><strong>Definition<\/strong>: type of gap connecting components in records of a genome assembly,<\/p>\n<p>or the type of biological gap in a record that is part of a genome assembly;<\/p>\n<p><strong>Value format<\/strong>: “between scaffolds”, “within scaffold”, “telomere”, “centromere”,<\/p>\n<p>“short arm”, “heterochromatin”, “repeat within scaffold”, “repeat between scaffolds”, “contamination”, “unknown”<\/p>\n<p><strong>Examples<\/strong>:<\/p>\n<p>\/gap_type=”between scaffolds”<\/p>\n<p>\/gap_type=”within scaffold”<\/p>\n<p><strong>Comment<\/strong>: This qualifier is used only for assembly_gap features and its values<\/p>\n<p>are controlled by the AGP Specification version 2.0:<\/p>\n<p>http:\/\/www.ncbi.nlm.nih.gov\/projects\/genome\/assembly\/agp\/AGP_Specification.<\/p>\n","protected":false},"excerpt":{"rendered":"<p>This page contains the current definition, format and controlled vocabularly for gap_type qualifier. The page has been created on Ocober 9, 2013. Last updated on December 6, 2017. Qualifier: \/gap_type= Definition: type of gap connecting components in records of a genome…<\/p>\n","protected":false},"author":1,"featured_media":0,"parent":233,"menu_order":0,"comment_status":"closed","ping_status":"closed","template":"","meta":{"_acf_changed":false,"footnotes":""},"acf":[],"_links":{"self":[{"href":"https:\/\/www.insdc.org\/wp-json\/wp\/v2\/pages\/38"}],"collection":[{"href":"https:\/\/www.insdc.org\/wp-json\/wp\/v2\/pages"}],"about":[{"href":"https:\/\/www.insdc.org\/wp-json\/wp\/v2\/types\/page"}],"author":[{"embeddable":true,"href":"https:\/\/www.insdc.org\/wp-json\/wp\/v2\/users\/1"}],"replies":[{"embeddable":true,"href":"https:\/\/www.insdc.org\/wp-json\/wp\/v2\/comments?post=38"}],"version-history":[{"count":1,"href":"https:\/\/www.insdc.org\/wp-json\/wp\/v2\/pages\/38\/revisions"}],"predecessor-version":[{"id":39,"href":"https:\/\/www.insdc.org\/wp-json\/wp\/v2\/pages\/38\/revisions\/39"}],"up":[{"embeddable":true,"href":"https:\/\/www.insdc.org\/wp-json\/wp\/v2\/pages\/233"}],"wp:attachment":[{"href":"https:\/\/www.insdc.org\/wp-json\/wp\/v2\/media?parent=38"}],"curies":[{"name":"wp","href":"https:\/\/api.w.org\/{rel}","templated":true}]}}