{"id":34,"date":"2022-06-20T13:43:51","date_gmt":"2022-06-20T12:43:51","guid":{"rendered":"https:\/\/insdc.org\/?page_id=34"},"modified":"2022-07-21T14:51:55","modified_gmt":"2022-07-21T13:51:55","slug":"controlled-vocabulary-culturecollection-qualifier","status":"publish","type":"page","link":"https:\/\/www.insdc.org\/submitting-standards\/controlled-vocabulary-culturecollection-qualifier\/","title":{"rendered":"Controlled vocabulary for \/culture_collection qualifier"},"content":{"rendered":"<p>This page contains the current definition, format and controlled vocabularly for culture collection qualifier.<\/p>\n<p>The page has been created on Ocober 9, 2013.<\/p>\n<p> <\/p>\n<p><strong>Qualifier<\/strong>: \/culture_collection=<\/p>\n<p><strong>Definition<\/strong>: institution code and identifier for the culture from which the nucleic acid sequenced was obtained,<\/p>\n<p>with optional collection code.<\/p>\n<p><strong>Value format<\/strong>: “<institution-code>:[<collection-code>:]<culture_id>”<\/p>\n<p>Please note that institution code and collection code are taken from a controlled vocabulary maintained by the INSDC:<\/p>\n<p>ftp:\/\/ftp.ncbi.nlm.nih.gov\/pub\/taxonomy\/coll_dump.txt<\/p>\n<p><strong>Example<\/strong>:<\/p>\n<p>\/culture_collection=”ATCC:26370″ <\/p>\n<p><strong>Comment<\/strong>: the \/culture_collection qualifier should be used to annotate live microbial and viral cultures,<\/p>\n<p>and cell lines that have been deposited in curated culture collections; microbial cultures in personal or<\/p>\n<p>laboratory collections should be annotated in strain qualifiers;<\/p>\n<p>annotation with a culture_collection qualifier implies that the sequence was obtained from a sample<\/p>\n<p>retrieved (by the submitter or a collaborator) from the indicated culture collection, or that the sequence<\/p>\n<p>was obtained from a sample that was deposited (by the submitter or a collaborator) in the indicated culture <\/p>\n<p>collection; annotation with more than one culture_collection qualifier indicates that the sequence was obtained<\/p>\n<p>from a sample that was deposited (by the submitter or a collaborator) in more than one culture collection.<\/p>\n<p>culture_id and institution_code are mandatory, collection_code is optional.<\/p>\n","protected":false},"excerpt":{"rendered":"<p>This page contains the current definition, format and controlled vocabularly for culture collection qualifier. The page has been created on Ocober 9, 2013. Qualifier: \/culture_collection= Definition: institution code and identifier for the culture from which the nucleic acid sequenced…<\/p>\n","protected":false},"author":1,"featured_media":0,"parent":233,"menu_order":0,"comment_status":"closed","ping_status":"closed","template":"","meta":{"_acf_changed":false,"footnotes":""},"acf":[],"_links":{"self":[{"href":"https:\/\/www.insdc.org\/wp-json\/wp\/v2\/pages\/34"}],"collection":[{"href":"https:\/\/www.insdc.org\/wp-json\/wp\/v2\/pages"}],"about":[{"href":"https:\/\/www.insdc.org\/wp-json\/wp\/v2\/types\/page"}],"author":[{"embeddable":true,"href":"https:\/\/www.insdc.org\/wp-json\/wp\/v2\/users\/1"}],"replies":[{"embeddable":true,"href":"https:\/\/www.insdc.org\/wp-json\/wp\/v2\/comments?post=34"}],"version-history":[{"count":1,"href":"https:\/\/www.insdc.org\/wp-json\/wp\/v2\/pages\/34\/revisions"}],"predecessor-version":[{"id":35,"href":"https:\/\/www.insdc.org\/wp-json\/wp\/v2\/pages\/34\/revisions\/35"}],"up":[{"embeddable":true,"href":"https:\/\/www.insdc.org\/wp-json\/wp\/v2\/pages\/233"}],"wp:attachment":[{"href":"https:\/\/www.insdc.org\/wp-json\/wp\/v2\/media?parent=34"}],"curies":[{"name":"wp","href":"https:\/\/api.w.org\/{rel}","templated":true}]}}